Package: SplitKnockoff 1.1
Haoxue Wang
SplitKnockoff: Split Knockoffs for Structural Sparsity
Split Knockoff is a data adaptive variable selection framework for controlling the (directional) false discovery rate (FDR) in structural sparsity, where variable selection on linear transformation of parameters is of concern. This proposed scheme relaxes the linear subspace constraint to its neighborhood, often known as variable splitting in optimization. Simulation experiments can be reproduced following the Vignette. We include data (both .mat and .csv format) and application with our method of Alzheimer's Disease study in this package. 'Split Knockoffs' is first defined in Cao et al. (2021) <arxiv:2103.16159>.
Authors:
SplitKnockoff_1.1.tar.gz
SplitKnockoff_1.1.zip(r-4.5)SplitKnockoff_1.1.zip(r-4.4)SplitKnockoff_1.1.zip(r-4.3)
SplitKnockoff_1.1.tgz(r-4.4-any)SplitKnockoff_1.1.tgz(r-4.3-any)
SplitKnockoff_1.1.tar.gz(r-4.5-noble)SplitKnockoff_1.1.tar.gz(r-4.4-noble)
SplitKnockoff_1.1.tgz(r-4.4-emscripten)SplitKnockoff_1.1.tgz(r-4.3-emscripten)
SplitKnockoff.pdf |SplitKnockoff.html✨
SplitKnockoff/json (API)
# Install 'SplitKnockoff' in R: |
install.packages('SplitKnockoff', repos = c('https://wanghaoxue0.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/wanghaoxue0/splitknockoff/issues
Last updated 3 years agofrom:259761699f. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 21 2024 |
R-4.5-win | OK | Nov 21 2024 |
R-4.5-linux | OK | Nov 21 2024 |
R-4.4-win | OK | Nov 21 2024 |
R-4.4-mac | OK | Nov 21 2024 |
R-4.3-win | OK | Nov 21 2024 |
R-4.3-mac | OK | Nov 21 2024 |
Exports:canonicalSVDhittingpointnormcsimu_evalsimu_unitsk.createsk.decomposesk.filtersk.selectW_signW_support
Dependencies:clicodetoolscolorspacefansifarverforeachggplot2glmnetgluegtableisobanditeratorslabelinglatex2explatticelifecyclemagrittrMASSMatrixmgcvmunsellmvtnormnlmepillarpkgconfigR6RColorBrewerRcppRcppEigenrlangRSpectrascalesshapestringistringrsurvivaltibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
singular value decomposition | canonicalSVD |
hitting point calculator on a given path | hittingpoint |
default normalization function for matrix | normc |
functions for evaluating simulations | simu_eval |
default unit for simulations | simu_unit |
generate split knockoff copies | sk.create |
make SVD as well as orthogonal complements | sk.decompose |
Split Knockoff filter for structural sparsity | sk.filter |
split knockoff selector given W statistics | sk.select |
W statistics generator for directional FDR control | W_sign |
W statistics generator for FDR control | W_support |